rs260013680 SNP Detail

Summary

• ID
  rs260013680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78796679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCGATGC CTGGGCCTGA
  GATGAAGTGT TTGAGATTAG CGTTCGCCTA GGTCTTCCTC CCACCCAGGG CCCCGTTTGC
  ACAGCCTCTC AGGATCATGG GTTTCTCTTC TGAGACAGTC TAGCAGTTCC ACCCAGTCTG
  TGTTCTGAAG ACCAACACGC CCGTGTGTGT GCGCACACAC ACATAAACAC ACAGTTTTCT
  Y
  GAGAGCAGGG ATTGAGCTAT CCATGGCCTT CCCTGAGTTG CTCTGTGTAG TCCCAGGCTA
  ACGCTCCTTT CAGCTCTACA CCTGAGGGTC TTTTGGGAGT GGGCTGGCAG AAGTGGGTCA
  GTGCATCTGG AAGCCCAATT TAGTAACCGA GTGGAGGCAG GGGCATGCTG TCTATGGTCT
  TCTAGGCTAA GAAACCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394665345	MGP_WTSI_15_78742909	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260013680					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394665345	MGP_WTSI_15_78742909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78796679 () rs orientation: forward

Symbol	Name	Function Class
1700027A07Rik	RIKEN cDNA 1700027A07 gene	within coordinates
Cpgi7305	CpG island 7305	833 bp proximal
Gm49510	predicted gene, 49510	Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase	Noncoding-Transcript-Variant
Rr404490	regulatory region 404490	1162 bp upstream
Rr505452	regulatory region 505452	within coordinates
Rr505453	regulatory region 505453	227 bp distal
Rr505454	regulatory region 505454	950 bp proximal
Rr505455	regulatory region 505455	1283 bp proximal
Sh3bp1	SH3-domain binding protein 1	432 bp downstream
Tssr132010	transcription start site region 132010	963 bp downstream
Tssr132011	transcription start site region 132011	1428 bp upstream
Tssr132012	transcription start site region 132012	1437 bp upstream
Tssr132013	transcription start site region 132013	1452 bp upstream
Tssr132014	transcription start site region 132014	1891 bp upstream
Tssr132015	transcription start site region 132015	1929 bp upstream