rs259815395 SNP Detail

Summary

• ID
  rs259815395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108289893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTACCT CCCCAAAGTC
  AAACAACAGG AGGAATCCCC CACCCAGAGT TTATGCAGAG GAACCAATGA ACTCGATAAG
  ATAAGCTTAC TTACAGAGCA GTGGGTTAGG GGTGTAGGCA CGGATGACCT TGAAGCAGCT
  CTGGTGACTT CCCTAAGGAG ACTTCCCCTT GCCTCTTCCC ACTTCTATCC TCTAGCCCCT
  Y
  CCCCCAAACC ATCTGCAGTT AGGACAGAAT TGCATACAGC TGGTTGAGAG GGACGGCTGC
  ATACTCAGGT GAAGGTCCCG TGACCTTCTG TCCCACCTCC TCCTTCTATG ACGGAAGGTA
  AACCGTCCAC AGGCCCAGCT GTGATGGTCT TTCCGAAGCA GGCGCAACAG AACTCCTGAA
  GATGCTTGCA GATGTTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359163774	MGP_WTSI_3_108185495	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259815395					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359163774	MGP_WTSI_3_108185495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108289893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13699	CpG island 13699	889 bp proximal
Gm12522	predicted gene 12522	within coordinates
Psrc1	proline/serine-rich coiled-coil 1	1262 bp upstream
Rr375556	regulatory region 375556	within coordinates
Rr583219	regulatory region 583219	1682 bp distal
Rr583220	regulatory region 583220	1641 bp distal
Rr583221	regulatory region 583221	58 bp distal
Rr583222	regulatory region 583222	within coordinates
Rr583223	regulatory region 583223	710 bp proximal
Rr583224	regulatory region 583224	1160 bp proximal
Rr583225	regulatory region 583225	1961 bp proximal
Tssr31246	transcription start site region 31246	1252 bp upstream
Tssr31247	transcription start site region 31247	1310 bp upstream
Tssr31248	transcription start site region 31248	1406 bp upstream
Tssr31249	transcription start site region 31249	1428 bp upstream
Tssr35142	transcription start site region 35142	36 bp upstream