rs259621714 SNP Detail

Summary

• ID
  rs259621714
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120807830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGCTCT TCCTGGTCCT
  CACTAGGTTG TCAAACGCCG GGCAACCGGG CTGCCGCGGC GCGGAGGCCT GGGCTGAGGC
  GAGTTGCGGA GGCGGCGGGA GGCCACAGAG GCCGGAAGTG CGGGCCGGAG CGCTCCGGGG
  CTGCGCCGAG ATGGCGAGAA TGCTGGCGGT CCGGGTGGTG GCAGGGCTGG CGGCGGCCGC
  K
  GTGGCCGCCC TGCTGTTGGA GCACTACGGC CTGGCTGGGC CGACTACGCC GCTGCCGAAG
  CCCAGAGGCT CCCAGAGGCC GCACCCCGCC CCGGGCTCGG AAGCCAACAA CATCTTCTGG
  GGGCTGCAGG TGAAGTGGCG GGAGGCCAGG GGAGGGCACA GCGCGGGGCG GGCTCGCCCA
  GCAGGGGGCC TCGGTCGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355458396	MGP_WTSI_2_120803085	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259621714					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355458396	MGP_WTSI_2_120803085	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120807830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			within coordinates
Gm55820	predicted gene, 55820			302 bp downstream
Rr397244	regulatory region 397244			1228 bp upstream
Rr563749	regulatory region 563749			1347 bp distal
Rr563750	regulatory region 563750			1124 bp distal
Rr563751	regulatory region 563751			813 bp distal
Rr563752	regulatory region 563752			322 bp distal
Rr563753	regulatory region 563753			291 bp distal
Rr563754	regulatory region 563754			within coordinates
Rr563755	regulatory region 563755			219 bp distal
Rr563756	regulatory region 563756			142 bp proximal
Rr563757	regulatory region 563757			1401 bp proximal
Tmem62	transmembrane protein 62			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722			242 bp downstream
Tssr19723	transcription start site region 19723			164 bp downstream
Tssr19724	transcription start site region 19724			41 bp downstream