rs259591162 SNP Detail

Summary

• ID
  rs259591162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTTACC AATGTGGAAT
  GAAAAGATGC TGCTGAGCAT AGATAGTAAC CCCTTCCCGC GTCCAAACCA TGGCTCTTTG
  CGCAGGTTTT CCTGCTTGTC CGGGTTCGGA GTTCAAATTT GAACTTCCTT GGAACCGGTA
  CAACAACTGT GCAGTGACTT GACAACTCTA AGCCACCTAT TTCCCGAAAG GTACATGTCG
  Y
  TCATGTACAA TGAAATGATA CTTGAAAAGT ACTTGGGCAA GTTTCTGAGG CCGGGGAATA
  GTAACTGACA AGCTTTAAGG CAATGTGGTC AGGCCTTGGG GTTAGATGCT TTTGGTTTAT
  AAATTCCTCA GAGCCACCTT ACTCTTTCAT TCTCATCTTT GAAAGTTAAA CAGGAACGTC
  GGCACGTGCT GGTGGTACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331994	CHEV_4_131818003	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259591162					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	246 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	486 bp upstream
Rr600911	regulatory region 600911	1550 bp distal
Rr600912	regulatory region 600912	578 bp distal
Rr600913	regulatory region 600913	within coordinates
Rr600914	regulatory region 600914	780 bp proximal
Rr600915	regulatory region 600915	975 bp proximal
Tssr39362	transcription start site region 39362	1571 bp downstream
Tssr39363	transcription start site region 39363	1550 bp downstream
Tssr43650	transcription start site region 43650	516 bp upstream
Tssr43651	transcription start site region 43651	466 bp upstream