rs259568059 SNP Detail

Summary

• ID
  rs259568059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCAAAA CCACACGGGA
  CCGAGAATAA TTCACTAATT CATAGTCCCG AGGTGGCAGG CAACTATTGT TAATTGTTCC
  TGCTCCCTTC CTGGTGTGTC CTGTGTCACA TACATTCAGA CCTTGGCATC TGAGTAGTTG
  GAAGAGGCGA CTTCTCAGAA GTTGCTCTGC CTGGGCACCA AAAAAAAAAA AAGAAAAAAA
  R
  AAAAAAAAAA ACCTCCTGGA GGAAACATTC GGTGGGGTGA GGGAGCAGCA TGGCCAGGGG
  TTCCCGACAC AGGGCCTTGT GTGTTGAAAG CAGGGATGCT TCTTATTCCG TTTCTCTAAA
  ATCATCATTC CGTGTGCCAC TGTAATAGTG TGGGACATGG TGTGTGTACA CATGTGTCCA
  TAAGGAGACT GCGCACACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss355635336	MGP_WTSI_2_129070117	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	A	A	A	A	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	A	G	A	G	G	A	A	A	A	G	G	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs259568059					SNP	A	G	A	G	A	A	A	A	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	A	G	A	G	G	A	A	A	A	G	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355635336	MGP_WTSI_2_129070117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086301 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1995 bp upstream
Rr373844	regulatory region 373844	1328 bp downstream
Rr373845	regulatory region 373845	1561 bp upstream
Rr564888	regulatory region 564888	1530 bp distal
Rr564889	regulatory region 564889	785 bp distal
Rr564890	regulatory region 564890	165 bp distal
Rr564891	regulatory region 564891	257 bp proximal
Rr564892	regulatory region 564892	272 bp proximal
Rr564893	regulatory region 564893	1128 bp proximal
Tssr20109	transcription start site region 20109	1976 bp upstream