rs259108624 SNP Detail

Summary

• ID
  rs259108624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118226802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATGTA TTCATAGTGA
  GTACTGAAAG GGTGGGCTGA GAAATTAAAC ACCCTGGCAG TTCTAAATGA CCCTTAAACC
  CTAGAAGCTC AACCAGCTTG TCAACTTAGT GAGTTCAGAG TATGGAAAAT GGGTTTAATT
  ATTTTGTGCC TCGAAGCTGT TTCCCTCCCT TTAAAAACCA TTATGTTGTA CATAGCTCTA
  R
  GGCCTTCAAT GGGGAGATGC CTATGTTTGC AAATCTATAA GTATTTGATT TCAAGTAATA
  AATTGAATGA CTGCTTATTT TCTGTGAGAA CATGCATTTC CAAAACACAC TGTTGAAAAT
  TCCATCAATG CATGACCCTA TCTTGATCTG AGATTCACTT CTTCCTAAAG CCAGCCAGGC
  AAATACATTT GTAATATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359403794	MGP_WTSI_3_118136071	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259108624					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359403794	MGP_WTSI_3_118136071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118226802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13750	CpG island 13750	319 bp proximal
Cpgi13751	CpG island 13751	1208 bp proximal
Gm9916	predicted gene 9916	1617 bp upstream
Gm26871	predicted gene, 26871	within coordinates
Gm54528	predicted gene, 54528	1568 bp upstream
Mir137	microRNA 137	704 bp upstream
Rr375642	regulatory region 375642	within coordinates
Rr583895	regulatory region 583895	1674 bp distal
Rr583896	regulatory region 583896	1025 bp distal
Rr583897	regulatory region 583897	within coordinates
Rr583898	regulatory region 583898	1127 bp proximal
Rr583899	regulatory region 583899	1628 bp proximal
Tssr31408	transcription start site region 31408	1688 bp downstream
Tssr31409	transcription start site region 31409	1634 bp downstream
Tssr31410	transcription start site region 31410	1615 bp downstream
Tssr31411	transcription start site region 31411	780 bp upstream