rs258946681 SNP Detail

Summary

• ID
  rs258946681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGAGAGT CACCCTGTGG
  TTGCTGGGGA TTGAACTCAG GACCTCTGGA AGAGCAGTCA GTACTCTTAA CTGCTGAGCC
  AGCTCTTCAG CCCCAGTGGA ATCTTTTTGT AGCATTAAAA ATAAAAGTAT TTGGGGCAGG
  CCAGATGGCT CAGCAGGGGA AGGAACTTGA TACCAAGCCT GAGAACCTGA GTTCCATCCT
  Y
  GAGACCCACA TAGGAGAGAG AAATGACTGC TGAAAGTTTT CCTCTGATCT CCACACCTAT
  ACCTCAGAAT GCACATGAGT GTGGGCACAC AAACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACATACAT AGAGTAATGA TTTTAAAAAA TTAAAGCATT TCGTTAATGT
  ATACTCTGGG TTTTCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765053	CHEV_3_52557500	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258946681					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660999 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	870 bp proximal
Tssr33262	transcription start site region 33262	1467 bp downstream