rs258914079 SNP Detail

Summary

• ID
  rs258914079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74524292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTTGCT ATTATAGTCA
  CATTTTGTGC AAGCCAGAAA AGTTGTGTAG GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAATAT GAGGAGGCAG CCTCTGGCAC AGAATATCCT
  TTCATTCATC GTGTTAAGTA TTTAGTTCTA AATTGGTACC AATTTACAAT CCCCTTCATG
  Y
  CCACCTTCGT AAGTGATGTT TAATACCAGC ATTGTCCAAA GCAGCCCATC TGGCAGCAGG
  GTCATGGCCA AGGGTATATT TGAATGGACT GAGAGAAAAA AAAATTCTTG ATTTTTTTTT
  CTTCTCCCTT TAATTTTGTT AGAGGAAATC AAGTCTGATA CTCCAACCAG CAATTGGCTC
  ACTGCAAAGA GTGGCAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484925	MGP_WTSI_2_74532005	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258914079					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484925	MGP_WTSI_2_74532005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74524292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11796	CpG island 11796	1994 bp distal
Cpgi11797	CpG island 11797	1054 bp distal
D2Mit37	DNA segment, Chr 2, Massachusetts Institute of Technology 37	4 bp distal
Gm14396	predicted gene 14396	1317 bp upstream
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd10	homeobox D10	Intron
Igs15	intergenic site 15	within coordinates
Rr44605	regulatory region 44605	1892 bp distal
Rr44606	regulatory region 44606	109 bp proximal
Rr559353	regulatory region 559353	1842 bp distal
Rr559354	regulatory region 559354	276 bp proximal
Rr559355	regulatory region 559355	443 bp proximal
Rr559356	regulatory region 559356	1079 bp proximal
Rr559357	regulatory region 559357	1328 bp proximal
Tssr18409	transcription start site region 18409	1985 bp downstream
Tssr18410	transcription start site region 18410	1972 bp downstream
Tssr18411	transcription start site region 18411	1874 bp downstream
Tssr18412	transcription start site region 18412	1313 bp upstream
Tssr18413	transcription start site region 18413	1342 bp upstream