rs258880438 SNP Detail

Summary

• ID
  rs258880438
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG CTGGTTGAGT CATCCCTCCA
  M
  CCCCACCCCA GTTAGGAACT CTTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321003281	CHEV_3_142283540	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258880438					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326337 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	87 bp upstream
Gbp2b	guanylate binding protein 2b	1397 bp downstream
Gm54185	predicted gene, 54185	1294 bp upstream
Rr398088	regulatory region 398088	393 bp downstream
Rr586457	regulatory region 586457	1600 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	37 bp proximal
Tssr32225	transcription start site region 32225	1725 bp downstream
Tssr32226	transcription start site region 32226	1685 bp downstream
Tssr32227	transcription start site region 32227	20 bp upstream
Tssr32228	transcription start site region 32228	71 bp upstream
Tssr32229	transcription start site region 32229	110 bp upstream
Tssr32230	transcription start site region 32230	146 bp upstream
Tssr32231	transcription start site region 32231	163 bp upstream
Tssr32232	transcription start site region 32232	697 bp upstream
Tssr35947	transcription start site region 35947	1395 bp upstream