rs258596348 SNP Detail

Summary

• ID
  rs258596348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118284998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCTAA AGCTAGGACT
  CATCCAAGTT TATAGGCTCT GAGAAGCATG GTGGTGGCCG ACTGCTGCCT CCCGCTAAAG
  CCTCCCGCCA CCCCAATCAG CCCTTAGTAG GCACAGCTGG CCCTCCTCTT CCAGGAAAAG
  CCTTGAGGGA ACGGTTGAAC CCTGGAAATT TCCCGTAATC ATAAGCCGCG ACTGTCACAA
  W
  GCAGACAGGA GATGAGTGGG TCCTCATGCT GGACTGGACA GAGGACCACG AATGGGGCCA
  TGCAGGCTGA ACCTCAAGAA GAAGCTGGGT GCGGGCCAAG CCATAGTCAT CGGCGGGACA
  GGCTGAGAGA TGCGAAGGAA GGGGTGGAGA GCTGGGGCTG GGTGTGCTTC CTGCCCCGGG
  ATCTGGCGAC CCGCCCCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362992096	MGP_WTSI_4_118100406	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258596348					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362992096	MGP_WTSI_4_118100406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118284998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14684	CpG island 14684	within coordinates
Elovl1	ELOVL fatty acid elongase 1	323 bp upstream
Rr598393	regulatory region 598393	within coordinates
Rr598394	regulatory region 598394	447 bp proximal
Rr598395	regulatory region 598395	1410 bp proximal
Rr598396	regulatory region 598396	1911 bp proximal
Tssr38657	transcription start site region 38657	903 bp downstream
Tssr38658	transcription start site region 38658	277 bp upstream
Tssr38659	transcription start site region 38659	995 bp upstream
Tssr38660	transcription start site region 38660	1880 bp upstream
Tssr38661	transcription start site region 38661	1901 bp upstream
Tssr38662	transcription start site region 38662	1940 bp upstream