rs258565100 SNP Detail

Summary

• ID
  rs258565100
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155499906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttcggttt tggttttggt ttttcgagac
  agggtttctc tgtgtagtcc tgactgtcct gaaactcact ctgtagacca ggctggcctc
  gaactcagaa atctgcctgc ctctgcctcc caagtgctgg gattaaaggc atgtgccacc
  W
  ctgcccggct ACTTATCCAT TTTCTTAATG GATATTAATA TACAATCATT ACTTTTTTGT
  ACTTTTGAGT CTTATTGTGT AGACGATGGT CTCTCAAATG TCTCTCTTCC TCACCTTCCT
  GATTACTGGG ACCCTGGGTA CATGGCTCTG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442204	CHEV_4_154789558	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258565100					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155499906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			621 bp proximal
Rr606476	regulatory region 606476			1657 bp proximal
Tssr40639	transcription start site region 40639			498 bp downstream
Tssr40640	transcription start site region 40640			463 bp downstream
Tssr40641	transcription start site region 40641			431 bp downstream
Tssr44947	transcription start site region 44947			671 bp upstream
Tssr44948	transcription start site region 44948			645 bp upstream
Tssr44949	transcription start site region 44949			565 bp upstream