rs258476249 SNP Detail

Summary

• ID
  rs258476249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106697724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCCGG GGCGACTGAG
  CGAGCGTTCC ACTGCACGAG TTACTTGCAC TGGAAGGTGG GGGAGATCCC TGCCAGTCAA
  CCCCTGTCTA TGGGTTGGTT CCTGCATAAG CCTGTTTTCT ATTTTAAAGC ATGTCTCAAG
  GGGGAAAAAA AGAGAGAAAG AAGAGAGTGA GAAGGTTCAC CCCGGACTCT GCAAACCTGG
  R
  AAGGCTGGTC CCTGATTCCC TGATCTCAGG GTTTGTTACG TAATAAGTTG GATTGTTAAT
  TCTGAAGGTC TTGCCCGGGC ATCAGAGAAG CAGGAGGCCA AGGGCAAAAC GGCCATGTAG
  AACCCCGCCA TCACCATCAA GTTAAAATCA TCTACCTACC TAGTCATAGC CAACCCAGGG
  GCTCCCCTCA CCTGGCATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746225	MGP_WTSI_4_106513132	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258476249					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746225	MGP_WTSI_4_106513132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106697724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14534	CpG island 14534	within coordinates
Gm12746	predicted gene 12746	483 bp downstream
Gm31125	predicted gene, 31125	366 bp upstream
Gm57074	predicted gene, 57074	within coordinates
Rr376971	regulatory region 376971	within coordinates
Rr596838	regulatory region 596838	1816 bp distal
Rr596839	regulatory region 596839	1459 bp distal
Rr596840	regulatory region 596840	432 bp distal
Rr596841	regulatory region 596841	280 bp distal
Rr596842	regulatory region 596842	within coordinates
Rr596843	regulatory region 596843	139 bp proximal
Tssr38191	transcription start site region 38191	281 bp downstream
Tssr42648	transcription start site region 42648	477 bp upstream