rs258242489 SNP Detail

Summary

• ID
  rs258242489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCTTTCA TTCTCATCTT
  TGAAAGTTAA ACAGGAACGT CGGCACGTGC TGGTGGTACA CGCTTTTAAT TCCACAATTC
  CTGTCTAGCC TGGTCTACAT AGTGGGTTCT AGGCCAGCTG TGGCTACATA ATGAGACCTT
  GTCTCAAAAA AAAAAAGCAA GCCAAACGTA GAGATGAGGG GTGTGAGGAG GGAAGTAGGT
  Y
  GGTAGGTAGA ACACGTGCAG AAGACCCACA AGGGTTATTT CCCATCTTTC TTCCTATAGA
  CATTGTGTTG TATCTGTCTT CTTTGCTTCC AAAGGGCAGG TTGTGGGCTG TGTGTGTGTG
  TGTGTGTAGA GATGGCACGT TGGGTGCAGG CTCCTGACCA CCTGAGTTCC ACCACTCGAA
  CCTACATAGT GATTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363290498	MGP_WTSI_4_131818343	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258242489					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363290498	MGP_WTSI_4_131818343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	586 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	826 bp upstream
Rr600911	regulatory region 600911	1890 bp distal
Rr600912	regulatory region 600912	918 bp distal
Rr600913	regulatory region 600913	336 bp distal
Rr600914	regulatory region 600914	440 bp proximal
Rr600915	regulatory region 600915	635 bp proximal
Tssr39362	transcription start site region 39362	1911 bp downstream
Tssr39363	transcription start site region 39363	1890 bp downstream
Tssr43650	transcription start site region 43650	856 bp upstream
Tssr43651	transcription start site region 43651	806 bp upstream