rs258226036 SNP Detail

Summary

• ID
  rs258226036
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18061434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAAACA AAAAGGTTCC
  TCCCGCTCGC TGCGTTCCCG TGGTGGTGGT GGTGGTGGGG GGCCTGCGCG CCGGACTCCA
  GGGCCCTGAC CTCTGACCTC GGCTCCTCTC GGCTCTCCCG GTGCGGCGCG GCCACTTTTT
  ACCCAGGATG CCCCGCGCGG GCCGCGCTCT TGTGGAGCCG GAGCCCTTCC TGCTCCTCCA
  W
  GCCCGGCTCG CGGCCCCTCC CCCTGCGCCG CCAGCCCCTC CCCCTGCGCC GAGCCCCGCG
  GGAGGATTCT CCGCCGGGGA ACCCCCGCCC CGCCCCGCCC CGCCCCGCCC CCACGCGGGC
  CCGGGCTGCG GAGACTGCGG CCGGCCAGGC CGGCCGGGCG GGGTGCTGGG CGCTGCGGGG
  CCGCGGGGGC GGGGAGGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353244066	MGP_WTSI_2_17978250	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258226036					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244066	MGP_WTSI_2_17978250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18061434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			within coordinates
Cpgi11234	CpG island 11234			within coordinates
Gm57467	predicted gene, 57467			666 bp downstream
Mir7655	microRNA 7655			1223 bp upstream
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr396788	regulatory region 396788			717 bp downstream
Rr552290	regulatory region 552290			1939 bp distal
Rr552291	regulatory region 552291			999 bp distal
Rr552292	regulatory region 552292			69 bp distal
Rr552293	regulatory region 552293			within coordinates
Rr552294	regulatory region 552294			1534 bp proximal
Tssr16357	transcription start site region 16357			1421 bp downstream
Tssr16358	transcription start site region 16358			1402 bp downstream
Tssr16359	transcription start site region 16359			890 bp downstream
Tssr16360	transcription start site region 16360			505 bp upstream
Tssr22782	transcription start site region 22782			633 bp upstream