rs258170842 SNP Detail

Summary

• ID
  rs258170842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113411795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCCACCC ACTCCCCAGC TGCTCCCCAG
  CCTCAGCCTC ACTCACTCCA TTGTTTCTCC GACCCAAGCT GTGGTCACAC TGAGTGGAGA
  AGCTGAAGTC AGTGCTAAAG AGGCCCGCAC TGATTTGTCC CTGTCTCAGG GGACAGAGTC
  Y
  GCTTCACGCT GGCAGGAGGT GAGTCACACC TCCTGGTGCT GTGAGGGACC TGAAAGTCAC
  CTATAGTCCA GAAACTCCAC GGGCAGCCAG ACGGTGGAGC CTGCTTTGCC CCATGGGCCC
  TTGAGCAATA GAGCCCTCCT GAGGTTTAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910862	CHEV_6_113384828	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258170842					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113411795 () rs orientation: forward

Symbol	Name	Function Class
Cidec	cell death-inducing DFFA-like effector c	Intron
Gm52871	predicted gene, 52871	48 bp upstream
Rr636516	regulatory region 636516	within coordinates
Tssr58211	transcription start site region 58211	58 bp upstream
Tssr62447	transcription start site region 62447	320 bp upstream
Tssr62448	transcription start site region 62448	288 bp upstream
Tssr62449	transcription start site region 62449	64 bp upstream
Tssr62450	transcription start site region 62450	46 bp upstream
Tssr62451	transcription start site region 62451	27 bp upstream
Tssr62452	transcription start site region 62452	914 bp downstream