rs258064838 SNP Detail

Summary

• ID
  rs258064838
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTACTC ACCTCGTAGA
  TGGCAGAGAG ATCCATGGTG GCGCGAATGG CCTTGGTGAA GAGACCGACT GTCGGTTCGC
  AGAAGTCAGG CTGTGGCCCG CAGCAGGAGC TTTCTCCTTT TATGGGGCGG CCTGGGGGCG
  TGGCCACTAG AGCTTCCGGG ACGCGCCCCC GCGGCGTAGC TCGGCCGGCC TGGTACTAGG
  S
  CCCTTCCGCC TATCTGCTGG TTAGCATGCA AAATGTGCCT GAACTTGGCC CTCCCGCAGC
  TCCGGCCCCT CTCGGGGGGT AGTAGGGAGG GTTGTGTACG ACCAACTGGA GGTGATGGTA
  GCGGGGCGTC CTAGTGTTTT TCAGAGGTGG AAGGCAGTCG GGAAGAGAAC TGGGGCAGAA
  GTGGGGGCAG GGCTCTAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858541	MGP_WTSI_7_29164381	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258064838					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858541	MGP_WTSI_7_29164381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078787 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1050 bp downstream
Gm73795	predicted gene, 73795	1887 bp upstream
Rr368284	regulatory region 368284	1172 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1408 bp distal
Rr644241	regulatory region 644241	372 bp distal
Rr644242	regulatory region 644242	118 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	768 bp proximal
Rr644245	regulatory region 644245	881 bp proximal
Rr644246	regulatory region 644246	1397 bp proximal
Rr644247	regulatory region 644247	1898 bp proximal
Tssr2163	transcription start site region 2163	within coordinates
Tssr2164	transcription start site region 2164	127 bp downstream
Tssr2165	transcription start site region 2165	170 bp downstream
Tssr65463	transcription start site region 65463	1867 bp downstream
Tssr65464	transcription start site region 65464	1309 bp downstream
Tssr65465	transcription start site region 65465	within coordinates
Tssr65466	transcription start site region 65466	1897 bp upstream
Tssr65467	transcription start site region 65467	1921 bp upstream
Tssr71496	transcription start site region 71496	1731 bp upstream
Tssr71497	transcription start site region 71497	1483 bp upstream
Tssr71498	transcription start site region 71498	1422 bp upstream
Tssr71499	transcription start site region 71499	1328 bp upstream
Tssr71500	transcription start site region 71500	1304 bp upstream
Tssr71501	transcription start site region 71501	1277 bp upstream
Tssr71502	transcription start site region 71502	1252 bp upstream
Tssr71503	transcription start site region 71503	1211 bp upstream
Tssr71504	transcription start site region 71504	1180 bp upstream
Tssr71505	transcription start site region 71505	1163 bp upstream
Tssr71506	transcription start site region 71506	1149 bp upstream
Tssr71507	transcription start site region 71507	1102 bp upstream
Tssr71508	transcription start site region 71508	1068 bp upstream
Tssr71509	transcription start site region 71509	1008 bp upstream
Tssr71510	transcription start site region 71510	964 bp upstream
Tssr71511	transcription start site region 71511	928 bp upstream
Tssr71512	transcription start site region 71512	848 bp upstream
Tssr71513	transcription start site region 71513	261 bp upstream
Tssr71514	transcription start site region 71514	127 bp upstream
Tssr71515	transcription start site region 71515	99 bp upstream
Tssr71516	transcription start site region 71516	919 bp downstream
Tssr71517	transcription start site region 71517	1565 bp downstream
Tssr71518	transcription start site region 71518	1587 bp downstream
Tssr71519	transcription start site region 71519	1608 bp downstream
Tssr71520	transcription start site region 71520	1652 bp downstream
Tssr71521	transcription start site region 71521	1664 bp downstream
Tssr71522	transcription start site region 71522	1706 bp downstream
Tssr71523	transcription start site region 71523	1930 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR