rs258015398 SNP Detail

Summary

• ID
  rs258015398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTCAG GCACACAAGG
  GCTGCCTGCC CACCTTTTTA TCATCAGCAC CCAAATGACT CCTCTTCTTC TTTAATGGTG
  AGAGCCTGCA ACGTTGATAT GTCCCACTTT ATTATAGTCT GCTCACTGTG GAATCTTTTT
  TAAAAACATA TTTTTAAAAA TTAATTAATT AATTTTTAGT ACTGTAGCTG TCTTCAGACA
  M
  ACCAGAACAG GTTACTGGAT CCCATAACAA ATGGTTGAGA GTCACCCTGT GGTTGCTGGG
  GATTGAACTC AGGACCTCTG GAAGAGCAGT CAGTACTCTT AACTGCTGAG CCAGCTCTTC
  AGCCCCAGTG GAATCTTTTT GTAGCATTAA AAATAAAAGT ATTTGGGGCA GGCCAGATGG
  CTCAGCAGGG GAAGGAACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765048	CHEV_3_52557267	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258015398					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660766 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	1103 bp proximal
Tssr33262	transcription start site region 33262	1700 bp downstream