rs257943740 SNP Detail

Summary

• ID
  rs257943740
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:68127814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTAGTGG AAGACTGACT
  TCCAGGCAGC TAGGGTGAGG AACTTATACC CACACCCACA GTGATACACA TACTCCAACC
  AGGTCACACC TCCAAATGGT GCCACTCCCT GGCCCAAGAA TAGATAACCA TCACAGTAGG
  TAAGTAGGTG GGAGAACAAG CTCATAGAAG CCGTGTGGGG GGGGGGGGCG GAGGGGGGAG
  S
  TGGGTTGGGC ATTTTCCAGG GATTGTTTGA CCTGGAATGG GGATAACATT TGAACTACAA
  ATAACAAAAA TATCCAATAA AAAAAGCGAG TCAGACTTTT TCCTATTGCC CATTGACAAC
  TTTAGCAGAT GAGAGAGCTG GCTCCAAGAT CGTGAGAACC AGAGTGCTCA TCCCATTCAT
  CACCAGCTTC AGCACTCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368662050	MGP_WTSI_6_68100824	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	C	C	G	G	C	C	C	G	G	G	C	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257943740					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G	G	C	C	G	G	C	C	C	G	G	G	C	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368662050	MGP_WTSI_6_68100824	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:68127814 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv2-116	immunoglobulin kappa variable 2-116	1055 bp upstream
Tssr56917	transcription start site region 56917	1024 bp upstream