rs257935409 SNP Detail

Summary

• ID
  rs257935409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119350404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTTCTTC TATTACAGCT AACTGGAACA
  GACTAGATTA TAGGTAATGA TGGCTAGCTT CCACCTAGGA TATAACCCTA GACCACCCTA
  GGTAAGAAGC TTGAGGTAGC CAAGAAAGAA TATAGCTACA TCTTGGTAAC TGGGATACTC
  Y
  GCCTCAGCAC AGCTACAAAC TAACTGTGAA TGTGAGAACA CAGAGAGCTG GGGGATAAGG
  GAAGTAACAC TGGTCAAGTG ACTAACAGTC AAGGTCAAGC TGGGGTTTCA ACCATCTCTA
  ACTAGATGGA CAGTACTACT TGAACAGTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321927779	CHEV_6_119323461	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257935409					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119350404 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637647	regulatory region 637647			1583 bp distal
Rr637648	regulatory region 637648			1603 bp proximal
Rr637649	regulatory region 637649			1769 bp proximal
Rr637650	regulatory region 637650			1807 bp proximal