rs257931779 SNP Detail

Summary

• ID
  rs257931779
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28079325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGGTT TAGGACTGTG
  ATTCCGGCCC CTCAGGGAGG CTGAGGCAGG AGACTGGTAG TTCAAGGCCT GGCTCCACTA
  TACAGTGGGT TCTAGGGCAG CTTGAGTAAC TTGGTGAGAC CCTTTTCTTA GGAAGTAAAA
  AGATGCCAGA TCACTGATGG CCCAAACTTT TAATTTCAGC ACTTGGAAGG CAGAAGCAGA
  M
  GGATTTCTAT GAGTTCGAGG CTAGCCTGGT CTACAGAGTG AGTTCCAGAA CAGCCAGGAC
  TACACACAGA AACCCTGTCT TTTTTGTTTG TTTGTTGTTT TTGTTTTTCG AGACAGGGTT
  TCTCTGTATA GCTCTGGCTG TCCTGGAACT CACTTTGTAG ACCAGGCTGG CCTTGAACTC
  AGAAATCCGC CTGCCTCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858547	MGP_WTSI_7_29164919	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257931779					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858547	MGP_WTSI_7_29164919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28079325 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	512 bp downstream
Gm73795	predicted gene, 73795	1349 bp upstream
Rr368284	regulatory region 368284	634 bp upstream
Rr400210	regulatory region 400210	389 bp downstream
Rr644240	regulatory region 644240	1946 bp distal
Rr644241	regulatory region 644241	910 bp distal
Rr644242	regulatory region 644242	656 bp distal
Rr644243	regulatory region 644243	155 bp distal
Rr644244	regulatory region 644244	230 bp proximal
Rr644245	regulatory region 644245	343 bp proximal
Rr644246	regulatory region 644246	859 bp proximal
Rr644247	regulatory region 644247	1360 bp proximal
Tssr2163	transcription start site region 2163	500 bp upstream
Tssr2164	transcription start site region 2164	398 bp upstream
Tssr2165	transcription start site region 2165	355 bp upstream
Tssr65464	transcription start site region 65464	1847 bp downstream
Tssr65465	transcription start site region 65465	510 bp downstream
Tssr65466	transcription start site region 65466	1359 bp upstream
Tssr65467	transcription start site region 65467	1383 bp upstream
Tssr65468	transcription start site region 65468	1492 bp upstream
Tssr71498	transcription start site region 71498	1960 bp upstream
Tssr71499	transcription start site region 71499	1866 bp upstream
Tssr71500	transcription start site region 71500	1842 bp upstream
Tssr71501	transcription start site region 71501	1815 bp upstream
Tssr71502	transcription start site region 71502	1790 bp upstream
Tssr71503	transcription start site region 71503	1749 bp upstream
Tssr71504	transcription start site region 71504	1718 bp upstream
Tssr71505	transcription start site region 71505	1701 bp upstream
Tssr71506	transcription start site region 71506	1687 bp upstream
Tssr71507	transcription start site region 71507	1640 bp upstream
Tssr71508	transcription start site region 71508	1606 bp upstream
Tssr71509	transcription start site region 71509	1546 bp upstream
Tssr71510	transcription start site region 71510	1502 bp upstream
Tssr71511	transcription start site region 71511	1466 bp upstream
Tssr71512	transcription start site region 71512	1386 bp upstream
Tssr71513	transcription start site region 71513	799 bp upstream
Tssr71514	transcription start site region 71514	665 bp upstream
Tssr71515	transcription start site region 71515	637 bp upstream
Tssr71516	transcription start site region 71516	381 bp downstream
Tssr71517	transcription start site region 71517	1027 bp downstream
Tssr71518	transcription start site region 71518	1049 bp downstream
Tssr71519	transcription start site region 71519	1070 bp downstream
Tssr71520	transcription start site region 71520	1114 bp downstream
Tssr71521	transcription start site region 71521	1126 bp downstream
Tssr71522	transcription start site region 71522	1168 bp downstream
Tssr71523	transcription start site region 71523	1392 bp downstream
Tssr71524	transcription start site region 71524	1978 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR