rs257828931 SNP Detail

Summary

• ID
  rs257828931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155686629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTAAAGC TGCTCGGCCC
  CGAGGCGGGC GCGGGCTGCA TCTTCCGTGG GCGTGGGCTG AGGCTCTGCA TAAACTCCAG
  TGGCAGCCCC AGAACTGAAC CCCATCGGGG GCCGGGGGCA TCCCGTCCTG GAGTCAGCCC
  GGGTTGGCAC CGGGCGCGCA GGTGGCGGGC TTCGCCGGGC TGGACGCACA GGTAGGGTGG
  R
  GACAGTGATG GGCACCGGGG CGGGGGGATC GCGGGCGGGC TGTGACTGCA GCAGGCGCCG
  GAAAGGAAGC GATACCCAAT GACAGGTGCA GGCACCCTGT CATCTGTCGG CGTGTACTGA
  TTTTGCCTCC CCAAACGTCT TATTTTGTGC CGTGGAATGG GCGACTCAGC CAGGTCCCAA
  GCCTCAACTT TATTTTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442496	CHEV_4_154976281	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257828931					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155686629 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	316 bp upstream
Cpgi15473	CpG island 15473	within coordinates
Rr398921	regulatory region 398921	707 bp downstream
Rr606514	regulatory region 606514	551 bp distal
Rr606515	regulatory region 606515	327 bp distal
Rr606516	regulatory region 606516	483 bp distal
Rr606517	regulatory region 606517	218 bp distal
Rr606518	regulatory region 606518	within coordinates
Rr606519	regulatory region 606519	637 bp proximal
Rr606520	regulatory region 606520	1662 bp proximal
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40681	transcription start site region 40681	895 bp downstream
Tssr40682	transcription start site region 40682	759 bp downstream
Tssr40683	transcription start site region 40683	729 bp downstream
Tssr40684	transcription start site region 40684	232 bp downstream
Tssr44954	transcription start site region 44954	880 bp upstream
Tssr44955	transcription start site region 44955	331 bp upstream