rs257794330 SNP Detail

Summary

• ID
  rs257794330
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106697453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAGGTGC CCCGCGCCGC CCGTTCCCCC CCCCCCCCGC
  ACCCCCCCTC CCGCGCGCTC CGCTCGGGTG CTGGAATTGC TGAGACGTTT CCCTGCACGC
  R
  CCCGGGTAAC ACTGCGGGGG CTGCTGCCCA GGCCCACACC CCCAGCGCTC CCCGCACCCC
  TCCCGGAGCC CACCACCCGG GGCGACTGAG CGAGCGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321247403	CHEV_4_106512861	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257794330					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106697453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14534	CpG island 14534	within coordinates
Gm12746	predicted gene 12746	754 bp downstream
Gm31125	predicted gene, 31125	95 bp upstream
Gm57074	predicted gene, 57074	within coordinates
Rr376971	regulatory region 376971	within coordinates
Rr596838	regulatory region 596838	1545 bp distal
Rr596839	regulatory region 596839	1188 bp distal
Rr596840	regulatory region 596840	161 bp distal
Rr596841	regulatory region 596841	9 bp distal
Rr596842	regulatory region 596842	within coordinates
Rr596843	regulatory region 596843	410 bp proximal
Tssr38191	transcription start site region 38191	10 bp downstream
Tssr42648	transcription start site region 42648	206 bp upstream