rs257768540 SNP Detail

Summary

• ID
  rs257768540
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109262860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC ATTAACGCAC TTCTCAAGGC
  A
  CAGCTCCCAT CTGCTCCGGA CAGAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254086	CHEV_4_109078268	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257768540					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109262860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			872 bp proximal
Rr597311	regulatory region 597311			within coordinates
Rr597312	regulatory region 597312			559 bp distal
Rr597313	regulatory region 597313			560 bp proximal
Rr597314	regulatory region 597314			1458 bp proximal
Tssr38345	transcription start site region 38345			1084 bp upstream
Tssr38346	transcription start site region 38346			1431 bp upstream
Tssr38347	transcription start site region 38347			1458 bp upstream
Tssr42761	transcription start site region 42761			582 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			within coordinates