rs257638397 SNP Detail

Summary

• ID
  rs257638397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTACTCT TAACCACTGA
  GCCACCTTTC TAGCCCCTTT CTTTTATTTT TAAAGATTTA TTTACTTAAA AATTAAGACT
  TAAATTTACA TAAAAAGTTA TTGATTTTTG TGTACATGTG TCTTGTGGTG TATGTATAGA
  GGGCGGAGAA CTTTTTTTTT TTTTTTTTTT TTTTTGAGTG GTTCTCTCTG CTATGTAGGT
  R
  CCAGGGATTG AGTTCAGGTG ACAGAGTCAG GCTTGGTGGC AAGCACCTTT ACATAGTGAG
  CCATCTCACT AGACCTGAAA AAGCAGTTTA CAGTCTTTTT TCTTTGAGGG CGGGCAGGAG
  ATAAAGAGCT GCAAGGCAAT GCCAGGGCCA AGCTTTGAAT ATGCTAGGCA AGTATTGTAC
  CATCAGCCAC GCTCCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362616172	MGP_WTSI_4_101179461	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257638397					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362616172	MGP_WTSI_4_101179461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364053 () rs orientation: forward

Symbol	Name	Function Class
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	149 bp upstream
Rr596168	regulatory region 596168	464 bp distal
Rr596169	regulatory region 596169	282 bp distal
Rr596170	regulatory region 596170	525 bp proximal
Rr596171	regulatory region 596171	806 bp proximal
Rr596172	regulatory region 596172	1155 bp proximal
Tssr37997	transcription start site region 37997	621 bp upstream
Tssr37998	transcription start site region 37998	905 bp upstream
Tssr37999	transcription start site region 37999	928 bp upstream
Tssr38000	transcription start site region 38000	999 bp upstream
Tssr38001	transcription start site region 38001	1075 bp upstream
Tssr38002	transcription start site region 38002	1091 bp upstream
Tssr38003	transcription start site region 38003	1243 bp upstream