rs257577415 SNP Detail

Summary

• ID
  rs257577415
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71159264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGACACC CTTCAGTATT
  TCAAACAGAA ACTAGCCATT AAATAAACAC TCATTCCTAT TGGTTTATTT TGCTTGAGAG
  GGGAGCTCCA AAGAGTTGAA CGAAGAATCG AGAATCGTCC CCTCCCCAAA TACAAGCCAG
  ATGCTGTTAT GGCTGACTTC GAGACGCGCA CGCCCGCACT TCTGGGTCTA GTTTTCACCT
  W
  TGCCCGGTTG TTTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAGCAAAG AAAAGCAACT
  GTCACATGTC ACAGAAGACT TTCCCCATAG AGGGGGGGAA AAACCCCAAA CGTAAATAAG
  CTGAGCAGCG ACGTCACCGC CGGTGTCTGT CTCCAGTTTC GGCTTTGTGG CTGTTCTGGT
  TTTGTGACCT CGGTGGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923323	MGP_WTSI_17_71201609	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257577415					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923323	MGP_WTSI_17_71201609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71159264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			1303 bp upstream
Gm56903	predicted gene, 56903			within coordinates
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			within coordinates
Rr530335	regulatory region 530335			1592 bp distal
Rr530336	regulatory region 530336			1211 bp distal
Rr530337	regulatory region 530337			1157 bp distal
Rr530338	regulatory region 530338			572 bp distal
Rr530339	regulatory region 530339			45 bp distal
Rr530340	regulatory region 530340			within coordinates
Rr530341	regulatory region 530341			499 bp proximal
Rr530342	regulatory region 530342			878 bp proximal
Rr530343	regulatory region 530343			1509 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145686	transcription start site region 145686			1549 bp downstream
Tssr145687	transcription start site region 145687			905 bp downstream
Tssr145688	transcription start site region 145688			246 bp downstream
Tssr145689	transcription start site region 145689			136 bp upstream
Tssr145690	transcription start site region 145690			462 bp upstream
Tssr145691	transcription start site region 145691			482 bp upstream
Tssr145692	transcription start site region 145692			526 bp upstream
Tssr145693	transcription start site region 145693			731 bp upstream
Tssr145694	transcription start site region 145694			831 bp upstream
Tssr145695	transcription start site region 145695			1474 bp upstream
Tssr149221	transcription start site region 149221			1911 bp upstream
Tssr149222	transcription start site region 149222			1201 bp upstream
Tssr149223	transcription start site region 149223			1182 bp upstream
Tssr149224	transcription start site region 149224			1151 bp upstream
Tssr149225	transcription start site region 149225			1053 bp upstream
Tssr149226	transcription start site region 149226			1037 bp upstream
Tssr149227	transcription start site region 149227			626 bp upstream
Tssr149228	transcription start site region 149228			531 bp upstream
Tssr149229	transcription start site region 149229			495 bp upstream
Tssr149230	transcription start site region 149230			376 bp upstream
Tssr149231	transcription start site region 149231			8 bp upstream
Tssr149232	transcription start site region 149232			6 bp downstream
Tssr149233	transcription start site region 149233			526 bp downstream
Tssr149234	transcription start site region 149234			906 bp downstream
Tssr149235	transcription start site region 149235			1203 bp downstream
Tssr149236	transcription start site region 149236			1213 bp downstream
Tssr149237	transcription start site region 149237			1282 bp downstream
Tssr149238	transcription start site region 149238			1373 bp downstream