rs257548902 SNP Detail

Summary

• ID
  rs257548902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79475474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCGTCA GAAGGCAGCA
  CGAGGGACTG GGAGGAGCAA GAGGGACTGG GAGGAGCGCA GGCGATGAAG AGTGGAACGT
  GTTGGGAGGA ATACAAGGGA GTGGGAGAGA GGAGTGGGCG ATGGAGGAGG AGCGCCAGGG
  AAGCGGAGAG TGGAGCCGGG AGAGGCTCGT AGGGAGGAGT GGGGCGGGGC GTGTGGGGGG
  R
  GGGGGAGGAG CATAGAGGCC TAACGTCTCC ATTGGCCAGC TTTACCCGCC CTGCGCCGAC
  ATCACTAGGG GTACGCCCGG AGTTATCACT CGCCGGGCTC TTACTGGGGC TAGAGAGTTG
  GGCGGGGTGC ACGAGTCTTC ACACACTTGA CCTACTGAGC TCCAGAGCAC AACTATGGAG
  GTTTTTGTTC TTTGGAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss358584855	MGP_WTSI_3_79372089	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs257548902					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358584855	MGP_WTSI_3_79372089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79475474 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	25 bp upstream
Cpgi13275	CpG island 13275	within coordinates
Fnip2	folliculin interacting protein 2	371 bp upstream
Rr578548	regulatory region 578548	496 bp distal
Rr578549	regulatory region 578549	within coordinates
Rr578550	regulatory region 578550	11 bp proximal
Rr578551	regulatory region 578551	1041 bp proximal
Tssr29585	transcription start site region 29585	135 bp upstream
Tssr33723	transcription start site region 33723	792 bp upstream
Tssr33724	transcription start site region 33724	473 bp upstream
Tssr33725	transcription start site region 33725	403 bp upstream
Tssr33726	transcription start site region 33726	377 bp upstream
Tssr33727	transcription start site region 33727	304 bp upstream
Tssr33728	transcription start site region 33728	13 bp upstream