rs257315494 SNP Detail

Summary

• ID
  rs257315494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138919696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGAGAGA GATACTCATT
  TAGGGAAACG GGCTGATTCT CTGTACATAA TGTAAAAAAG TATATGAAAC AGCATTTATT
  GAACCCAAAT GTTCTAGTCT TCTTACCCGG GTCTTTCCCA CAACTACTCT GGTAGCTATG
  AAGTGCAGGC AGGGATCCTT ATGGCTTATT CACTTGTCAT CTTTTGGTAC CTAAAAGCTG
  Y
  CCGCCTGGTC CTGATAGCAG GTGTTCAGCA ACAGGGGCGG CAGAGCCGGC TTCCCCATGC
  AGGTTCCGCT CGCTCTGTAG GGGCCGGGCC TCGTCCGGCG CACCAGTTCC GGGTCCGGGT
  GGGTTGCGGA GGGCCGGTCC CCTCCTAGTT TCGGCGCCTT CCGCATCCTC CGCCCAGGGG
  AACCAGTGAA CCGCTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363460510	MGP_WTSI_4_138748300	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257315494					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363460510	MGP_WTSI_4_138748300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138919696 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta	514 bp upstream
Cpgi15162	CpG island 15162	within coordinates
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	within coordinates
Rr603134	regulatory region 603134	322 bp proximal
Rr603135	regulatory region 603135	550 bp proximal
Rr603136	regulatory region 603136	712 bp proximal
Tssr39900	transcription start site region 39900	532 bp upstream
Tssr39901	transcription start site region 39901	557 bp upstream
Tssr39902	transcription start site region 39902	581 bp upstream
Tssr39903	transcription start site region 39903	849 bp upstream
Tssr39904	transcription start site region 39904	894 bp upstream
Tssr39905	transcription start site region 39905	924 bp upstream
Tssr39906	transcription start site region 39906	1701 bp upstream
Tssr44214	transcription start site region 44214	70 bp downstream
Tssr44215	transcription start site region 44215	229 bp downstream
Tssr44216	transcription start site region 44216	256 bp downstream
Tssr44217	transcription start site region 44217	279 bp downstream
Tssr44218	transcription start site region 44218	1611 bp downstream