rs257276417 SNP Detail

Summary

• ID
  rs257276417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87824221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGGAGA TGGAAGCAGG
  AGGATCAGAA GTTCGTGCTT GCCACACAAG TCAGATTACC TGAGTTCTAT TCCTGAGTCC
  AAAAAAGCTG GTTGAACTAC TAGGCTAGTT GGAATGCAGA CAGGGGACTC CTGGTCGTGT
  ATCATCTGCC TCTAGAATAT GGAAGGAGAG GCCTGATTTC CTGGAATAGA ACTTCTAACC
  Y
  CCGTAGGTGT GTGGTGCCAC TGGTGTCTGC ACTCAGGCAT ATACAAAAAG ACATACTTTT
  CAGAACCGAG GACTAAAAAG GGCCTTGTGC TGGGCTAAAT TCCCAATCCC AGCAAGTAAA
  AAGCCTTTAA AAATGATTTG TAATAAAAAT AAAATTCAGG GGGCTGGAAA AATGGCTTGG
  TGGTTAAGAG CACTGATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786163	MGP_WTSI_3_87720836	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257276417					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786163	MGP_WTSI_3_87720836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87824221 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1511 bp downstream
Hdgf	heparin binding growth factor	782 bp downstream
Rr579572	regulatory region 579572	265 bp proximal
Tssr29850	transcription start site region 29850	1969 bp downstream
Tssr29851	transcription start site region 29851	1834 bp downstream
Tssr29852	transcription start site region 29852	1819 bp downstream
Tssr29853	transcription start site region 29853	1731 bp downstream
Tssr29854	transcription start site region 29854	1587 bp downstream
Tssr29855	transcription start site region 29855	1402 bp downstream
Tssr29856	transcription start site region 29856	1366 bp downstream
Tssr29857	transcription start site region 29857	1342 bp downstream
Tssr29858	transcription start site region 29858	1311 bp downstream
Tssr29859	transcription start site region 29859	1279 bp downstream
Tssr29860	transcription start site region 29860	1131 bp downstream
Tssr29861	transcription start site region 29861	1109 bp downstream