rs257181189 SNP Detail

Summary

• ID
  rs257181189
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12749923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTGTTT TTGTTATTTT
  TTTAACTTCA GCCCATCCTC AGTAACAATG TGACCGTGGT TAATATGTGT CAAAGTCAAC
  ACATTGTCTT GTAACTGCCT TTGAAAGCGA CTTCGTACTT AAAAGTGTGC ACGACGCTGT
  CTAATTGCAT GAATAAGAAT GTACAAACAC TGCCAGTATA TTCTGTTTTA ATGATGAAGT
  A
  CATAAAAGTT CCATTCCTTT CTCTTCCATC ACTATTGAAA ACGCACTACT AAGGACCAGA
  GGTGGGGATA AAAATTAAGC CGCAAATGAG TCAGTAGCAG CAGTTGGCTT CCACCCAGTT
  AATAACTATT TCTACTTAAA TTTCATTCCT GAGACAAATA CTAATTCTTT TAAGTGCTTT
  TTCACAACCA AAACAAGAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321745449	CHEV_6_12699924	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257181189					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12749923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	373 bp distal
Rr626539	regulatory region 626539	682 bp distal
Rr626540	regulatory region 626540	24 bp distal
Rr626541	regulatory region 626541	411 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	671 bp upstream
Tssr1780	transcription start site region 1780	734 bp upstream
Tssr59828	transcription start site region 59828	845 bp upstream
Tssr59829	transcription start site region 59829	829 bp upstream
Tssr59830	transcription start site region 59830	757 bp upstream
Tssr59831	transcription start site region 59831	715 bp upstream
Tssr59832	transcription start site region 59832	484 bp upstream