rs257180458 SNP Detail

Summary

• ID
  rs257180458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155687454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTATATT AAAGTGATTC
  ATTTCCAGTG CAGAAGATGG AGAGACAGAA CAACATGAAG GACCTGTCCA CAAGATGGAG
  ATCCTGTGGC TGGTAATGTG GATGTCCCCA ACTGTTTATG TCTTAATCTG AGCACACCAC
  ACCAGTGATC CTGAAAAGAT CCATTCTTCA GAAGTGATAA ACACTATCAT AAAGCCACAG
  R
  GTGCAATGTG CTACTTTAGT CAGGAGTGAG TGACTGTCCC TTCCGTACAA ATTCTTCACT
  ACTGAGTGAA GTGTCACTGT TAGAAGCAGG ATGGGGGGCA GATTGTGAGC CCATGCAGGC
  CCTTTTCTGA GTTATTATTT CCCTTAGATA AACTTTTAGA CATGCATGGT ACTTGGAGAC
  TTGATGTATT GTTTTCATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321442499	CHEV_4_154977106	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257180458					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155687454 () rs orientation: forward

Symbol	Name	Function Class
B930046K06Rik	RIKEN cDNA B930046K06 gene	1141 bp upstream
Cpgi15473	CpG island 15473	660 bp distal
Rr398921	regulatory region 398921	1532 bp downstream
Rr606514	regulatory region 606514	1376 bp distal
Rr606515	regulatory region 606515	1152 bp distal
Rr606516	regulatory region 606516	1308 bp distal
Rr606517	regulatory region 606517	1043 bp distal
Rr606518	regulatory region 606518	553 bp distal
Rr606519	regulatory region 606519	within coordinates
Rr606520	regulatory region 606520	837 bp proximal
Slc35e2	solute carrier family 35, member E2	Intron
Tssr40681	transcription start site region 40681	1720 bp downstream
Tssr40682	transcription start site region 40682	1584 bp downstream
Tssr40683	transcription start site region 40683	1554 bp downstream
Tssr40684	transcription start site region 40684	1057 bp downstream
Tssr44954	transcription start site region 44954	1705 bp upstream
Tssr44955	transcription start site region 44955	1156 bp upstream