rs257135522 SNP Detail

Summary

• ID
  rs257135522
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGCTCC GCTCGGGGTG
  GAGTCTAATA GGGAAGGGCG GGACCACTTC GTGCTACTTC TGGTCTATCA GGGGAGCTCA
  AAAGTCTCAT GGGTGGGCCC GCTGTGAAGC GGGAGGGGCT TTGACGCGCG CCCCGCCTCC
  CAGTGGTGCG TCTTTTGCGG TGCAGGAAAG CTACTAAGTA CGCGCGTGCG CATAGCGCGC
  G
  TGGGTCCTAA AGTGGTGTTT CGTGGGTTAT CTTTGCAAAT GGGCTCCGCG GCCTAGCGCC
  CTGGTGGCCT AAAAACGAAG CCTGCAAGGA AGGGGTTCTC CGCCGAGGTG AGGGCAGTGA
  CGAAGGCAGC CGGCGGTGGG GTGGGGGAGG CGCGTCTTCT TGGGGCCAGG AGCAGACAAA
  GCCCCTTTGT CTCACCACGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356774967	MGP_WTSI_2_180922052	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs257135522					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356774967	MGP_WTSI_2_180922052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829140 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C330003G01Rik	RIKEN cDNA C330003G01 gene			within coordinates
Gm75115	predicted gene, 75115			within coordinates
Gm75119	predicted gene, 75119			1787 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr374383	regulatory region 374383			within coordinates
Rr572939	regulatory region 572939			1 bp distal
Rr572940	regulatory region 572940			50 bp distal
Rr572941	regulatory region 572941			within coordinates
Rr572942	regulatory region 572942			356 bp proximal
Rr572943	regulatory region 572943			1297 bp proximal
Rr572944	regulatory region 572944			1798 bp proximal
Tssr22287	transcription start site region 22287			within coordinates
Tssr22288	transcription start site region 22288			28 bp upstream
Tssr22289	transcription start site region 22289			162 bp upstream
Tssr22290	transcription start site region 22290			250 bp upstream
Tssr22291	transcription start site region 22291			289 bp upstream
Tssr22292	transcription start site region 22292			432 bp upstream
Tssr22293	transcription start site region 22293			530 bp upstream