rs257065865 SNP Detail

Summary

• ID
  rs257065865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80021790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACCATA CTGCAATGAA
  CATCTCCACA AATTCCACAC TTTTCTTCCT TTTAAGATTA ATATTTGGAT GGATGTAGGA
  GCCCGTGCTT AGTCCCAGCA CCTGGAAGGC AGAGGCAGGG AGATCTCTGA ATTCGAGGCC
  AGTCTGTTTT ACATTTTGAG TTCCGGGACA GCCATAGCTA CTTGGGGGGG GGGGGGGGGG
  R
  GATTGCTTGC TAGATCGTAG TGGCACACAC CTATAAATCC TCCTGTCTCA GATTGACACA
  AATTCGAAGC TATCTTGGAC TACACATTTG CAATCCTGTT TCAAAAGAAA AAAAGATTGC
  TAAAATTACT GCCTGAAACT GAGCTGGCCC ACTAAAAGTC CAGCTCTTGG GAAGTTGAGG
  CTAGAGGATC CCAGCAAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281246	CHEV_7_87516928	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257065865					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80021790 () rs orientation: forward

Symbol	Name	Function Class
Gm71928	predicted gene, 71928	within coordinates
Man2a2	mannosidase 2, alpha 2	667 bp upstream
Rr649878	regulatory region 649878	568 bp distal
Rr649879	regulatory region 649879	645 bp distal
Rr649880	regulatory region 649880	592 bp distal
Rr649881	regulatory region 649881	138 bp distal
Rr649882	regulatory region 649882	1497 bp proximal
Tssr67437	transcription start site region 67437	1683 bp downstream
Tssr67438	transcription start site region 67438	409 bp upstream
Tssr73222	transcription start site region 73222	1252 bp upstream
Tssr73223	transcription start site region 73223	1214 bp upstream
Tssr73224	transcription start site region 73224	1173 bp upstream
Tssr73225	transcription start site region 73225	674 bp upstream
Tssr73226	transcription start site region 73226	626 bp upstream
Tssr73227	transcription start site region 73227	548 bp upstream