rs257005252 SNP Detail

Summary

• ID
  rs257005252
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177970890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTTTG TTTGTGATCA
  TCTTTTTAAA AGTTGTAACA GCACCAAGAC TGACCTGGTT CTATCAGAGA GGCCAGAGAA
  TCTTGATTTG AACATGCAAG CAAACCCATT CTTCTCTGTC TTAGCCTTAA TACTATCCTT
  AGCCTTAAAA CTACCTACCC CCTCTTGTGT AGACTACTGG GGAAATATCT CTCTCTCTCT
  M
  TATATATATA TATATATAGA AAGCCTACAT TTGGAGGCCA CTGGACTTAC TGTACATGCA
  TTAGAGTCTT GATAACTAAA CAGAGAATAA GCTTGGAAAT GAACAAAGAC AGAAAGAACA
  TACACGCGCA AAGAATTCTT TCTTTAAGCT CACGTGGTGG TGCTATTCTG TTCTGTTGCA
  TAGACTGTGG CTGATTTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320628316	CHEV_2_178063802	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs257005252					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177970890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12873	CpG island 12873	1489 bp distal
Phactr3	phosphatase and actin regulator 3	Intron
Rr572391	regulatory region 572391	1295 bp distal
Rr572392	regulatory region 572392	410 bp proximal
Tssr22174	transcription start site region 22174	1563 bp downstream
Tssr22175	transcription start site region 22175	1530 bp downstream
Tssr22176	transcription start site region 22176	1484 bp downstream
Tssr22177	transcription start site region 22177	1414 bp downstream