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rs256953202 SNP Detail
Summary
  • ID
    rs256953202
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:78795928 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACAGCCTGC CCGGCGTCAG
    AGCCGGCGTT TACCAGCCTC CCCTGTCATC TCAAATATGC CTGCTCAGGT GGACCAGGGA
    GTAGCTACAG AGGACAGAGG AGGCCCTGAG GCTGTGGGTG GGCATCCCCC TCCACCAGCT
    CTGCCACCCC AGCCCCGGCC CAGGGGCCTC ATTTCAGAGA CAGAGTAAGC AGGCCCTCCT
    R
    CCTGGCAGGT CCTCATTGTC CCTTTCTCTC TCCTGCCATC CTCCCTCCCT TGTCCTCCCA
    GGATGGCCCT TGTCCAGTGC CTGGGTGCCT GCTGGGCCGG CCCCTATGGC CAGGAGGGCT
    CAGGCCAGCC CTCTCATTTC TAACCTTTTC CTCTTCCACT TTGAGCTTGG GGTTCCCACC
    TGACTCCCCA CTCTCCGGCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394665333 MGP_WTSI_15_78742158 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256953202 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss394665333 MGP_WTSI_15_78742158 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:78795928 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700027A07Rik RIKEN cDNA 1700027A07 gene 235 bp downstream
Cpgi7305 CpG island 7305 1584 bp proximal
Gm49510 predicted gene, 49510 Intron
Rr404490 regulatory region 404490 1913 bp upstream
Rr505452 regulatory region 505452 368 bp proximal
Rr505453 regulatory region 505453 503 bp proximal
Rr505454 regulatory region 505454 1701 bp proximal
Sh3bp1 SH3-domain binding protein 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant
Tssr132010 transcription start site region 132010 212 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory