rs256577667 SNP Detail

Summary

• ID
  rs256577667
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74511552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGACGCT ATTGAGGGCC
  CCTGGAGAAC CAACCGATCT CCCTGGGAGA TGCTATGACC ATCAAATTCA AGGGCTCCAG
  AGGAGTCTTG GGGATATGCC ACGAGATTGC TCAGGGCTTA GTGGGGCTCC AACACAGTGA
  AAGCTCCAAG AGACTTGAAC ACAGAAGACG ATGAGAGGAA GGCCAAAGCA CAAGGGGTTT
  S
  TCTGTGGGCG GTGAGTAGGG ACCTTATTCT GTGAGAGTGG GACTCATCTT CCTTTTGTTC
  TTCAGACCCT CGAGCTTTGA GGAAAGCCAG AAAACCGGGA CCTCTGTGTT TCCACGCTGG
  CTGAGTATTG AGAGGAGAGA GAAAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGTAA
  AGGGAAAGGA TGGAGGTACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484804	MGP_WTSI_2_74519265	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256577667					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	C	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484804	MGP_WTSI_2_74519265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74511552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11793	CpG island 11793			461 bp distal
Cpgi11794	CpG island 11794			355 bp proximal
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559343	regulatory region 559343			376 bp distal
Rr559344	regulatory region 559344			625 bp proximal
Rr559345	regulatory region 559345			1748 bp proximal
Tssr18395	transcription start site region 18395			1644 bp downstream
Tssr18396	transcription start site region 18396			1527 bp downstream
Tssr18397	transcription start site region 18397			1507 bp downstream
Tssr18398	transcription start site region 18398			547 bp downstream
Tssr18399	transcription start site region 18399			783 bp upstream
Tssr18400	transcription start site region 18400			810 bp upstream
Tssr18401	transcription start site region 18401			1078 bp upstream