rs256519807 SNP Detail

Summary

• ID
  rs256519807
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135397398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTCCTG CCCGGCTCGC
  CTCGGTACTT CTCTCTCGTC CTCTCTCGCT CACTCTCTCA CTTCCTGGCT GGAAATTCCC
  ACTGACGTCG AGAGAGAGCA GACAGACGGA CGGACCCACG CGCGCGCGCA CAGCGGGGGC
  GGGAGGTGGG GTCGCCTCCG GGGGTGGGGG AAGCCCGCGC GCCCCGACCC GGCGCCCCGA
  M
  CCCCAAGCCC CGCGGCGGCC GCGACGCCCC CGGGAGGCGC CCGCAGCCCA AGGGCAGGCC
  CGGACAGCTG GAGGCCACGG GAGACCGGCC TGGTCCCCAC GCGCTGGGCA CAAAAGTCAA
  TCTCATCTGC TTGTTCCCTC CTCTGGGGGT CTCGGCTACA CTCAGATCGC TCCATAGAGC
  GGACAGGAAT TTCGAGATCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841225	MGP_WTSI_3_135354601	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256519807					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841225	MGP_WTSI_3_135354601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135397398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	within coordinates
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	mRNA-UTR
Rr398044	regulatory region 398044	1199 bp downstream
Rr585767	regulatory region 585767	within coordinates
Rr585768	regulatory region 585768	1393 bp proximal
Tssr35824	transcription start site region 35824	1855 bp upstream
Tssr35825	transcription start site region 35825	381 bp upstream
Tssr35826	transcription start site region 35826	366 bp upstream
Tssr35827	transcription start site region 35827	324 bp upstream
Tssr35828	transcription start site region 35828	267 bp upstream
Tssr35829	transcription start site region 35829	230 bp upstream
Tssr35830	transcription start site region 35830	220 bp upstream
Tssr35831	transcription start site region 35831	158 bp upstream
Tssr35832	transcription start site region 35832	126 bp upstream
Tssr35833	transcription start site region 35833	73 bp upstream
Tssr35834	transcription start site region 35834	302 bp downstream