rs256443713 SNP Detail

Summary

• ID
  rs256443713
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138448610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATATTTT GGGTAAGTTG
  GAGCGCTCCT GGGTTTCCAA GTGCTGTGGC GGATGGGTGG GCGACGGTCC CCCGCCGTGG
  TCGCTGCTTT ACTTTTCGCC GCCCCCGGAG CTCCTGCCCC AGTCGCGGCG AGAGGCGTCT
  ACCTTCCGCC TTCCCGGCTC GAGCGCGGGG GAGAGAAACA CTTCATCCTT TCCAGGACTC
  S
  GAGGAGGTGA AAAGAGGAAC CAAGCCGGGC AGGGGGCAGC CAGGCCTCGG GGTGGCTTTT
  TTCTTTCTTT TCTTTCTTTC TTTCTTTTTT TTTTAAGGGG GTGGGGGGGG CGCGAAAAGC
  TGGGGTACAA ATGGGAGGAC GGCTCGGCAG TTTGAGAAAC GAGGGAGCAC ACGGATTAGA
  TTTGCTTCCC GTGGGATCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320981111	CHEV_3_138405813	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256443713					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138448610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13879	CpG island 13879			within coordinates
Rr367566	regulatory region 367566			238 bp upstream
Rr586188	regulatory region 586188			644 bp distal
Rr586189	regulatory region 586189			within coordinates
Rr586190	regulatory region 586190			496 bp distal
Tspan5	tetraspanin 5			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr32003	transcription start site region 32003			527 bp downstream
Tssr32004	transcription start site region 32004			517 bp downstream
Tssr32005	transcription start site region 32005			1418 bp upstream