rs256211042 SNP Detail

Summary

• ID
  rs256211042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84575354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttaattgta tattgagttt atgacttttt
  gttgtttgtg tgctttttat tttGTGTTGT TTTGTTTTGA GACAGGGTGT CACAACCTTG
  GATTTGCTAT AAAACCAAGA CTGGCCCTTT TCATACAATG GCTACTTTGC TGtatatata
  Y
  atatgtaata tgctgtatat atatatatgt aatatgtata catatatata tatatatata
  tgtaatatgt atacatatTA CATTATTGCA TATATTACCC TGGTGAAAAC AGAATATTTT
  TGGATGTGTT GTTTGGGGGG GGttcttgag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320371979	CHEV_2_84585167	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256211042					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84575354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	1041 bp distal
Gm19426	predicted gene, 19426	409 bp upstream
Gm57423	predicted gene, 57423	422 bp downstream
Rr373462	regulatory region 373462	1 bp downstream
Rr560322	regulatory region 560322	1813 bp distal
Rr560324	regulatory region 560324	1312 bp distal
Rr560325	regulatory region 560325	1111 bp distal
Rr560326	regulatory region 560326	605 bp distal
Rr560327	regulatory region 560327	194 bp distal
Tssr18680	transcription start site region 18680	1998 bp downstream
Tssr18681	transcription start site region 18681	1101 bp downstream
Tssr25039	transcription start site region 25039	1309 bp upstream
Tssr25040	transcription start site region 25040	1246 bp upstream
Tssr25041	transcription start site region 25041	1227 bp upstream