rs256090482 SNP Detail

Summary

• ID
  rs256090482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAGAAC TACATGCCTG
  GCACACACAA GGCCCTGGAA TTTAAGCACC AGAATCAAAG AGCTTCCTGT CTGAGACATA
  CATGAGGTTT GCTTTGCACT TCCATGGAGC AGTCTGTGAG GTAAATTGGC TTGGGGGATT
  TTTAACTCAT CCAAACGATT GGCAAAACAC GAAACTAGGA AAAGCCACGA TCCTCAGGAG
  R
  CTGTGTCCTC TCAGAATGGG TCAGGCTTGG ACCTCACTTC CTTGGCTTCT AGCAATTAGG
  ACCATTTGGA CAAACCCTAA ACCCTGCTAC CTTCTTCAGC TATGTGGTAG GCCTGCTACC
  ATGCCTGTCT TCCATGTGAG TCAGAGGGGA GTTATGGGGC TAACAGGAAC TTTGGATGGC
  AAGTCTGCCC TGCACACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863276	CHEV_3_105617345	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs256090482					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721743 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1140 bp upstream
Rr582787	regulatory region 582787	648 bp proximal
Rr582788	regulatory region 582788	1163 bp proximal
Rr582789	regulatory region 582789	1706 bp proximal
Tssr31084	transcription start site region 31084	1103 bp upstream