rs256005895 SNP Detail

Summary

• ID
  rs256005895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115896896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTCA ACTTACTTCT
  CGTTTATTTC CCCACCACTC CTCTTGGCTC CTGCCTAACT GGGTCGCGTT GGGGATGTTT
  GGCATGGCGC TCTAGCTTTT GTTCGTTTTA ATTCCGCGGC CCCCTTCCTC TGCCGGCGGA
  TTACTAGGTC CCGAACTCTG CCACTACAAC CTAGAGCAGC AAGCTCCGCC AACTGCACCA
  Y
  CGCCAGGCTA GGATTTTTGT TGTTGTTGTT GTTGTTGTTG TTGTTAAGTG GTACTTTCTT
  TCTCGTGCAG ATGCAGAGCC CTTTTTGTCA ATATTCATTT TTGTCTAGTA CAAGATATGA
  GCAGCTGAAC TCGGAGCATA GTCCCTCGGT GCGCTGCAGA CAGTGTAGAC CACCATTGAG
  AGTCTAGGGG TCCTGGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357867	MGP_WTSI_2_115892151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs256005895					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357867	MGP_WTSI_2_115892151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115896896 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
Cpgi12067	CpG island 12067	1703 bp distal
Cpgi12068	CpG island 12068	413 bp distal
Cpgi12069	CpG island 12069	122 bp proximal
G630016G05Rik	RIKEN cDNA G630016G05 gene	810 bp upstream
Meis2	Meis homeobox 2	mRNA-UTR
Rr562985	regulatory region 562985	1787 bp distal
Rr562986	regulatory region 562986	878 bp distal
Rr562987	regulatory region 562987	270 bp distal
Rr562988	regulatory region 562988	277 bp proximal
Rr562989	regulatory region 562989	1063 bp proximal
Rr562990	regulatory region 562990	1564 bp proximal
Rr562991	regulatory region 562991	1690 bp proximal
Tssr19467	transcription start site region 19467	798 bp upstream
Tssr19468	transcription start site region 19468	1518 bp upstream
Tssr25721	transcription start site region 25721	1817 bp upstream
Tssr25722	transcription start site region 25722	1666 bp upstream
Tssr25723	transcription start site region 25723	1644 bp upstream
Tssr25724	transcription start site region 25724	1282 bp upstream
Tssr25725	transcription start site region 25725	1177 bp upstream
Tssr25726	transcription start site region 25726	759 bp upstream
Tssr25727	transcription start site region 25727	726 bp upstream
Tssr25728	transcription start site region 25728	710 bp upstream
Tssr25729	transcription start site region 25729	680 bp upstream
Tssr25730	transcription start site region 25730	619 bp upstream
Tssr25731	transcription start site region 25731	562 bp upstream
Tssr25732	transcription start site region 25732	450 bp upstream
Tssr25733	transcription start site region 25733	352 bp upstream
Tssr25734	transcription start site region 25734	710 bp downstream
Tssr25735	transcription start site region 25735	740 bp downstream
Tssr25736	transcription start site region 25736	940 bp downstream
Tssr25737	transcription start site region 25737	976 bp downstream