rs255945911 SNP Detail

Summary

• ID
  rs255945911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:115595027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACGAGC CAGAGCCGCG
  GCCCCTTTAA CGTTCCACCT CCCCAGCACC ACACGCGCCC TCCTGCGTGA CGTCACCAAG
  GGGCGCCCAA TGGGGGCGCG GCTTACTGGC AAGCCTTGCC CGGGGCCGCT GCCAAAGGGG
  AAGTGAGCTA AGACTGGAGC TATGGCCCGG GTCTGGAGCC TGCGGCGGCC GCCACCGCCA
  R
  CACATCCAGA GAAGTCGCGA CCGAAGCAGG GGCCGGAGAC GCGGCTGGAC TGGCCGCGGC
  GCGTGTGAGT TGCGGAAGTC GCTGGTGGCG GAACACTTCA GGCTGGCGGA GCGGTGGTCA
  CCCCTCATCA CTGCGCCCCC TCCAGGCCCT AGCAGCAGGG CTCCCGCTCC TCTCGCGCGG
  GTCTCTACAA ACTCAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362936719	MGP_WTSI_4_115410435	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255945911					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362936719	MGP_WTSI_4_115410435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115595027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14611	CpG island 14611			within coordinates
Cpgi14612	CpG island 14612			848 bp proximal
Efcab14	EF-hand calcium binding domain 14			mRNA-UTR
				Noncoding-Transcript-Variant
Rr597763	regulatory region 597763			within coordinates
Rr597764	regulatory region 597764			314 bp distal
Rr597765	regulatory region 597765			128 bp distal
Rr597766	regulatory region 597766			130 bp proximal
Tssr38464	transcription start site region 38464			78 bp downstream
Tssr38465	transcription start site region 38465			20 bp downstream
Tssr38466	transcription start site region 38466			within coordinates
Tssr38467	transcription start site region 38467			583 bp upstream