rs255922401 SNP Detail

Summary

• ID
  rs255922401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:115898611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCCTCAC ATATAAAGAC
  AGTGTGGAGG GGCTGGCAGA GGCCCGGAGA GCGCGCCGGG AGAGGGGTTG CAGCCCGTGC
  GAGTTTGGCT CCAGTGGCCA AAGCAGGGAA GGCGGCCTCG GGGACCTTCT GGGAGCAGAG
  TCCAGCCAAG GGTTTCCCTC TCTTTCCGCT TCAAGCCCAA GACAGCAGAG CAGTTTGGAA
  Y
  CCGAAGGACT ATATGGTCCT TTCCCCCTCC CCCACCACTT TTTTCCCCCC TAGAAGAACT
  TCAAGATTAC AAATATCCGT CTCATTTGAT GCTGAATTAC TCGTGGACAG ATAAGAAAAG
  GTAAGTAAAA AGAAAAGGAA AAGTTGGCCT CCAGAATTTT TTTTTTTGGG AGGGGGTGAA
  GTTAAATCTC AGTTTATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357884	MGP_WTSI_2_115893866	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255922401					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357884	MGP_WTSI_2_115893866	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115898611 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	within coordinates
Rr562987	regulatory region 562987	1985 bp distal
Rr562988	regulatory region 562988	938 bp distal
Rr562989	regulatory region 562989	152 bp distal
Rr562990	regulatory region 562990	26 bp distal
Rr562991	regulatory region 562991	within coordinates
Tssr19467	transcription start site region 19467	880 bp downstream
Tssr19468	transcription start site region 19468	155 bp downstream
Tssr25734	transcription start site region 25734	989 bp upstream
Tssr25735	transcription start site region 25735	945 bp upstream
Tssr25736	transcription start site region 25736	764 bp upstream
Tssr25737	transcription start site region 25737	721 bp upstream