rs255900063 SNP Detail

Summary

• ID
  rs255900063
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53371303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCGCTGG GCGCCTGGCC
  GTATGAGCGC TGAGGTGCTC GAGAGCCTCC CTTCGCAAGG CTCTGGCCCC CTTCGTCCGG
  CTCCTAGTGC GCCCCGGCCG CCCGCCCGCT CCCGGAAGCT ACGAAAGCCC GTAACAAAGG
  ACCTGCGGGG GCCGCCGGTT GCCGGAGCTG CGGGACCCCG GGATCGGGCG GATCGGCGGG
  K
  CTGAGCGCCC GCGGGGCCAC GTGTCCCGGA TCACGGCGGT GAGCGGAGCG TGGCTCGGCG
  GCCTTCCCCG GAGCACCCGG CTGTCGGCAC CCTCCGGAGC CCTGATTTCT GCAAACGCAC
  AAGCCCGCTC TGCTCTGAGC AGCTGAAGCT TTGTGTGAAG AAGCTACTGA AGTCTGATTT
  TTATTTAAAA AAACAAACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CE/J	CZECHII/EiJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss357982252	MGP_WTSI_3_53267804	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CE/J	CZECHII/EiJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs255900063					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357982252	MGP_WTSI_3_53267804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53371303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	624 bp upstream
Proser1	proline and serine rich 1	mRNA-UTR
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	1073 bp distal
Rr576697	regulatory region 576697	206 bp distal
Rr576698	regulatory region 576698	270 bp distal
Rr576699	regulatory region 576699	within coordinates
Tssr29113	transcription start site region 29113	292 bp downstream
Tssr29114	transcription start site region 29114	201 bp downstream
Tssr29115	transcription start site region 29115	173 bp downstream
Tssr29116	transcription start site region 29116	60 bp downstream
Tssr29117	transcription start site region 29117	13 bp upstream
Tssr33269	transcription start site region 33269	650 bp upstream
Tssr33270	transcription start site region 33270	576 bp upstream