rs255592411 SNP Detail

Summary

• ID
  rs255592411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122038937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTTTGGGG GAAAGACTCT TGGGCAAAGC AAAGCAAAAG
  GAAAAAATAA AAATAAATTT AAAAAACAGA GCGGGGCGCG GGCAATGAGA CACTCGCGCC
  W
  TCGCATCAGC TCCTTAGACA CAGAAGCAGG CACGCTCTCA AGGCCTGGGA GGATGGACCT
  CCGGCGGTCC TCTCGAAGAG GGCGTGTCCA GGGCCGCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909882	CHEV_3_121948206	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255592411					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122038937 () rs orientation: forward

Symbol	Name	Function Class
Gclm	glutamate-cysteine ligase, modifier subunit	269 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1478 bp downstream
Rr375675	regulatory region 375675	811 bp downstream
Rr397979	regulatory region 397979	within coordinates
Rr584262	regulatory region 584262	1436 bp distal
Rr584264	regulatory region 584264	1019 bp distal
Rr584265	regulatory region 584265	within coordinates
Rr584266	regulatory region 584266	52 bp proximal
Rr584267	regulatory region 584267	185 bp proximal
Rr584268	regulatory region 584268	934 bp proximal
Tssr1039	transcription start site region 1039	455 bp upstream
Tssr31478	transcription start site region 31478	188 bp upstream
Tssr31479	transcription start site region 31479	275 bp upstream
Tssr31480	transcription start site region 31480	293 bp upstream
Tssr31481	transcription start site region 31481	322 bp upstream
Tssr31482	transcription start site region 31482	337 bp upstream
Tssr31483	transcription start site region 31483	488 bp upstream
Tssr31484	transcription start site region 31484	622 bp upstream
Tssr35443	transcription start site region 35443	59 bp upstream
Tssr35444	transcription start site region 35444	14 bp downstream