rs255520040 SNP Detail

Summary

• ID
  rs255520040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103671354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    attgctttt atccaggttt acaatgctgg
  ggggggggga gtggggcaaa cggagaagaa atgcaaggtc tagttaggtc agtggttttc
  aacctgtagg tctcgatccc cttggggggg tctcatatca gatatcctgc atatcagata
  Y
  attacagttc atcacagtag caaaattaca gctatgaagg agcaacaaca taattctatg
  gttggggggc catcatggca cgaggaactg tattaaaggg ttgcagcact aggaaggttg
  agaactgctg ctttaggtga ggaaaggagc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320442893	CHEV_2_103681166	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255520040					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103671354 () rs orientation: forward

Symbol	Name	Function Class
Gm13875	predicted gene 13875	1774 bp downstream
Gm56363	predicted gene, 56363	1805 bp downstream
Gm75184	predicted gene, 75184	within coordinates
Rr373620	regulatory region 373620	905 bp upstream
Rr561947	regulatory region 561947	1404 bp proximal