rs255423770 SNP Detail

Summary

• ID
  rs255423770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106696523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGGTTC TGGGAATACT
  AGATGCCCCC CGGCACACGC CGCCCCCCGC CGCCGGCCCA GCCCCGGGGC TCCCGCGCTG
  CGCAGCCCGC TCGGTGCGGA CTTGCTGCTG CCTCCCACCC CTCCCCGCAC AAGGCACTTC
  GCGGGAAAAG GCTGGTTTTG CCTTTTTATT TTTCTTCAGA GGTTGAGGCA GACATTGGGT
  Y
  CAGGCTCTAC GCACGCACCT ACTCGTCTGT GGCTCAGAGA TGAGGGGTGG GGGGAATTAA
  AGAGGCTAGG AGGCTTGTTC TACCCAAGAA CCTGTCAACT GCTTCCCTGT CACCCCTTTA
  TCCTCTGCCA CCCCTCCTGG TGTGACTGAC AGGCATCCAT CCCGCGAACC TCCTCTCCCA
  GAACATCGCC TGAGAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746208	MGP_WTSI_4_106511931	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255423770					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746208	MGP_WTSI_4_106511931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106696523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14533	CpG island 14533	1074 bp distal
Cpgi14534	CpG island 14534	within coordinates
Gm12746	predicted gene 12746	1684 bp downstream
Gm31125	predicted gene, 31125	within coordinates
Gm57074	predicted gene, 57074	within coordinates
Gm69615	predicted gene, 69615	1105 bp upstream
Rr376971	regulatory region 376971	within coordinates
Rr596835	regulatory region 596835	1752 bp distal
Rr596836	regulatory region 596836	1116 bp distal
Rr596837	regulatory region 596837	1149 bp distal
Rr596838	regulatory region 596838	615 bp distal
Rr596839	regulatory region 596839	258 bp distal
Rr596840	regulatory region 596840	386 bp proximal
Rr596841	regulatory region 596841	770 bp proximal
Rr596842	regulatory region 596842	922 bp proximal
Rr596843	regulatory region 596843	1340 bp proximal
Tssr38191	transcription start site region 38191	881 bp upstream
Tssr42648	transcription start site region 42648	695 bp downstream