rs255216045 SNP Detail

Summary

• ID
  rs255216045
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17087097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATTTCT CCACTGAGCT
  GTGTGTAGCT CCCGTCCACA CCGAACTCCA TTTAACTGCA ACTTCCATGC TTCAGATGAT
  CATAGAAAAC GAAAAGACGT TTCAATAGCC ATTATGTCTG TATACAGTGT AAGCTAAAGG
  GAGATATAAT AAAGTCTGAC ATATTAGTCT TCTTTAAAAG CTTGCATGTT TAATAAGCTC
  W
  AGGTGACAGG CATAAATACC TTAAAGAGTA ATGGCAAGAG GAATCCGTAT TTCCACAAGT
  AATGGATCAG CTCCTTATTT TTATTTCAAA GAGCTTAGAA TTTTCCATGA AATTGGTAAA
  CTCCAGACTT AAGTAGCTTC ATTGCCTGTA GGTTAACACA AAGATAATAT CATTGAACAC
  AGAGCAATTT CTCAGGATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753493	CHEV_6_17037098	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255216045					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17087097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			447 bp proximal
Rr626763	regulatory region 626763			597 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant