rs254879680 SNP Detail

Summary

• ID
  rs254879680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50545651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGGATT GCGTATTTTT
  TTAAAAAAAC TATGAACAAA TCACTATTAG GATGTTCTTC ACGTACAGGG AATAAGTGGA
  TCGGATGCTT TAGATTGAAG TGCAGCAGCA TTACCTAGGC ATTCCTGCCA GAGCTGCCCC
  AAGCCACCTT CTCTGAGCTA GGCTTTTCAT TTGCTGAGCT TCTAGTACAG CCAGAGATGG
  Y
  TTCCTTTCAG TCCATAGCCA GCCCTAGACT CAGCGTGGAC AGAACACATT GTCCACCTCC
  AAACAACAGA CTCCTTGTGG CCCCGCCCCC CGTTCCATGT TTTGATTGAG GAGGAGGAAA
  TTTTAGTAGA AGCTTTAAAT AGCATATATT ATATATTTTA AGAAAAACTA AAGGGCCTAG
  GTTCCTACTC TCATTTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368271728	MGP_WTSI_6_50518670	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C	C	T	C	C	T	T	T	C	C	T	C	T	C	C	C	T	T	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254879680					SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C	C	T	C	C	T	T	T	C	C	T	C	T	C	C	C	T	T	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368271728	MGP_WTSI_6_50518670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50545651 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	1604 bp distal
Rr630034	regulatory region 630034	1909 bp distal
Rr630036	regulatory region 630036	1111 bp distal
Rr630037	regulatory region 630037	1581 bp distal
Tssr56423	transcription start site region 56423	1921 bp downstream