rs254556809 SNP Detail

Summary

• ID
  rs254556809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131986778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTCCTC TGACCTCCAC
  AAGTATACCA GCAAGGCAGG CAGGCAGGCA GACACACCAA TATACACACA CAGACAGTGA
  CAGGAACATA TACATTTTTG CTGTTGTTTT GAGACACAGG CTGGAACATG CAATGTAGTT
  GGCCTCAGAC TAGGATATCT GCCTGCTGCT GCTTTACAAG TGAGTGAGGA CAGGAAGAAC
  R
  GCGTGTGCCA CCGTGCCAGG TAATAAATCT AAATTTAAAA TCTTAGCCCA GGAGAGGCAG
  AAGCAGAAAG ATATGCAAGT GTAAAGTCGG TCTGGTCTAC ACGGCAAGTG CCAGTCAAAC
  CAGAGCTACA GAGAAAGATG CCAAGAAAAT AAAAAGAAAG AAAAGAAAAG AAAAGCAAGC
  ACGTGCTTGG TATGATCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331982	CHEV_4_131815382	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254556809					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131986778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14953	CpG island 14953			1269 bp proximal
Gm28874	predicted gene 28874			1069 bp upstream
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			919 bp proximal
Rr600912	regulatory region 600912			1072 bp proximal
Tssr39362	transcription start site region 39362			1037 bp upstream
Tssr39363	transcription start site region 39363			1054 bp upstream