rs254401528 SNP Detail

Summary

• ID
  rs254401528
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138920384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGCTGC CCGGCGCGGG
  GGGGTGGGGG GGGGAGGGGG GCGCTGACCC GGATGTTCAC TCTTGGGCAC CCGGGGAAGT
  GGAAGCGCAG GGCCCTGCTG CGGGGGGGAG AGCCACAGAC GCCGGGACAG GGACCGTCGC
  CGCCGCCGCC ACCATGGTAA AGGGACCCCT TCACGGCTCC ATCCCGGGAC CCCTCTCACC
  S
  CCGGAGCTCG CGTCCACTCC TTCGCCGACC CGCCCGGCCC GGGAAGGGTG GGGATCCGGG
  GTGGGGGAGG GGCGGGGTCC CGGACCCTAG GCAGACGCCA CTCTTCGGGT CCGGAGTGGG
  CGGCGGGAGG CCCTGATAGC CTATGACCCC GCCCTGGGCT CCATGTGGAG CCCAGTTCTT
  CTCCCTGCAA GTCCAGGCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363460522	MGP_WTSI_4_138748988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254401528					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363460522	MGP_WTSI_4_138748988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138920384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530077C14Rik	RIKEN cDNA 9530077C14 gene			within coordinates
Capzb	capping actin protein of muscle Z-line subunit beta			Intron
				Noncoding-Transcript-Variant
Cpgi15162	CpG island 15162			within coordinates
Rr377279	regulatory region 377279			within coordinates
Rr603133	regulatory region 603133			367 bp distal
Rr603134	regulatory region 603134			139 bp distal
Rr603135	regulatory region 603135			within coordinates
Rr603136	regulatory region 603136			24 bp proximal
Tssr39900	transcription start site region 39900			132 bp downstream
Tssr39901	transcription start site region 39901			113 bp downstream
Tssr39902	transcription start site region 39902			79 bp downstream
Tssr39903	transcription start site region 39903			161 bp upstream
Tssr39904	transcription start site region 39904			206 bp upstream
Tssr39905	transcription start site region 39905			236 bp upstream
Tssr39906	transcription start site region 39906			1013 bp upstream
Tssr44214	transcription start site region 44214			605 bp upstream
Tssr44215	transcription start site region 44215			436 bp upstream
Tssr44216	transcription start site region 44216			415 bp upstream
Tssr44217	transcription start site region 44217			355 bp upstream
Tssr44218	transcription start site region 44218			923 bp downstream